We develop and apply advanced computational methods to study RNA, the most intriguing actor in molecular biology.
Contact
Giovanni Bussi
Principal Investigator, Full Professor
- Email: bussi@sissa.it
- Phone: +39 040 3787 407
- Office: A-338, SISSA, via Bonomea 265, 34136 Trieste, Italy
Resources
- Explore our software on GitHub. Highlights:
- MDRefine, a package to perform refinement of molecular dynamics simulation trajectories.
- py-bussilab, a collection of Python tools.
- Thermostats/barostats:
- Stochastic velocity rescaling (a.k.a. v-rescale)
- Stochastic cell rescaling (a.k.a. c-rescale)
- PLUMED related links:
- RNA force fields are here (please checkout the correct branch)
- Find our open reviews in the news section
- Our previous webpage is available as a historical archive
Funding
Our research has been funded by the following sources:
- SISSA, institutional funds
- PNRR, National Centre for HPC, Big Data, and Quantum Computing
- MSCA, two post-doctoral fellowships
- EMBO, one post-doctoral fellowship
- PRIN, PRIN 2022, Hunting metal ions within cryo-EM derived RNA structures
- ERC, Starting Grant 2012, Small RNAs in silico
- FIRB, Futuro in Ricerca 2010
- CINECA and EuroHPC for computer time
